Last updated: 2019-10-26

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Knit directory: ebpmf_demo/

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Rmd f54439f zihao12 2019-10-26 Experiment_ebpmf_rank1
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Rmd 7d22540 zihao12 2019-10-26 compare scd lee
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Rmd b1d4b72 zihao12 2019-10-25 index
Rmd 7d1140c zihao12 2019-10-25 update some analysis
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Rmd 0f3cf6b zihao12 2019-10-23 compare vae with ebpm
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Rmd 7d15c1e zihao12 2019-09-23 Start workflowr project.

Welcome to my research website.

Vignette

Vignette for ebpm_exponential_mixture: https://zihao12.github.io/ebpmf_demo/vignette_ebpm.html Vignette for ebpm_point_gamma : https://zihao12.github.io/ebpmf_demo/vignette_ebpm2.html

Demo for algorithms

My demo for EBPM with mixture of exponential is here: https://zihao12.github.io/ebpmf_demo/ebpm_demo.html

My demo for EBPM with point gamma is here: https://zihao12.github.io/ebpmf_demo/ebpm_point_gamma_demo.html

My demo for EBPMF_rank_1 is here: https://zihao12.github.io/ebpmf_demo/ebpmf_rank1_demo.html

My demo for EBPMF_rank_k is here: https://zihao12.github.io/ebpmf_demo/ebpmf_rankk_demo.html

My demo for EBPMF_rank_k (speed up) is here: https://zihao12.github.io/ebpmf_demo/ebpmf_rankk_demo2.html

Some experiments & Issues

My Comparison of EBPM vs ash_pois is here: https://zihao12.github.io/ebpmf_demo/Compare_ebpm_vs_ash_pois.html

My experiments on efficient softmax function in R is here: https://zihao12.github.io/ebpmf_demo/softmax_experiments.html

My experiments on estimating mode: https://zihao12.github.io/ebpmf_demo/pois_mode_est.html

My issues on ebpmf: https://zihao12.github.io/ebpmf_demo/Issues_ebpmf_rankk.html (fixed part of it and it continues to appear in the next issue…)

More issues on ebpmf https://zihao12.github.io/ebpmf_demo/Issue_ebpmf_issue2.html

Comparisons between ebpmf and nmf on simulated data: https://zihao12.github.io/ebpmf_demo/Compare_ebpmf_nmf.html

Comparisons between ebpmf and nmf on 10x genomics data: https://zihao12.github.io/ebpmf_demo/Compare_ebpmf_nmf2.html

Investigation of rank 1 again: https://zihao12.github.io/ebpmf_demo/ebpmf_rank1_demo3.html

Debug ebpmf exponential mixture: https://zihao12.github.io/ebpmf_demo/debug_ebpmf_exponential_mixture.html

Debug ebpmf point gamma : https://zihao12.github.io/ebpmf_demo/debug_ebpmf_point_gamma.html

Implement EBVAE: https://zihao12.github.io/ebpmf_demo/ebvae-poisson-normal.html

Compare VAE with EBPM : https://zihao12.github.io/ebpmf_demo/Compare_ebvaepm_ebpm.html

Compare scd and lee : https://zihao12.github.io/ebpmf_demo/Compare_scd_lee.html

Experiment_ebpmf_rank1 : https://zihao12.github.io/ebpmf_demo/Experiment_ebpmf_rank1.html